Plot a phylogenetic tree and its node data — visualizeTree • ScrambledTreeBuilder

Plot a phylogenetic tree and its node data

Usage

visualizeTree(
  your_tibble,
  value = "node",
  valueround = 2,
  outerlabelsize = 0.25,
  innerlabelsize = 3,
  ynudge = 0,
  xnudge = 0
)

Arguments

your_tibble: A ConvenientTblTree object.
value: Tibble value to label on internal nodes of the tree, or name of a column in the tree object.
valueround: Number of integers to round value.
outerlabelsize: Size of label border.
innerlabelsize: Overall size of label.
xnudge, ynudge: Adjust horizontal or vertical position of labels (useful when plotting multiple labels).

Value

A phylogenetic tree showcasing phylogeny of species, additional node values, or just node IDs. No legend is show when displaying node IDs.

See also

Other Focal clade functions: eog(), focalClade(), recordAncestor(), recordClades(), subMatrix(), subTree()

Other Plotting functions: MRCA_2D_plot(), ellipsePlot(), treeHeatMap()

Author

Noah Brenner

Charles Plessy

Examples

visualizeTree(Halo_Tree)

visualizeTree(Halo_Tree, value = Halo_Tree$Scrambling_index)

visualizeTree(Halo_Tree, "Scrambling_index") # same