Ellipse plots

Plot alignments statistics for pairs of genome, draw ellipses on plots with the same most recent common ancestor, color points and ellipses by focal clade.

Usage

ellipsePlot(
  df,
  dim1 = "percent_difference_local",
  dim2 = "index_avg_strandDiscord",
  xlim = c(0, max(df[[dim1]])),
  ylim = c(0, max(df[[dim2]]))
)

Arguments

df

A data frame produced by MRCAs.

dim1, dim2

the name of the pairwise statistics to summarise.

xlim, ylim

Minimal and maximal X and Y values.

See also

Other Plotting functions: MRCA_2D_plot(), treeHeatMap(), visualizeTree()

Author

Charles Plessy

Examples

ellipsePlot(Halo_DF |> averageResults())