2D MRCA plot

2D plot of the statistics extracted for each MRCA.

Usage

MRCA_2D_plot(tb, errorbars = FALSE, xlim = 40, ylim = 1)

Arguments

tb

A tibble produced by MRCAs.

errorbars

Plot the error bars?

xlim, ylim

Maximal X and Y value.

See also

Other Plotting functions: ellipsePlot(), visualizeTree()

Author

Charles Plessy

Examples

(p <- MRCAs(Halo_DF, Halo_FocalClades) |> MRCA_2D_plot() +
  ggplot2::labs(x="nucl. diff", y="scrambling"))

p + ggplot2::geom_point(
  data=Halo_DF,
  ggplot2::aes(x = percent_difference_local,
               y = index_avg_strandDiscord,
               color = focalClade))