Most recent common ancestors

Summarise statistics for MRCAs

Usage

MRCAs(
  results,
  clades = NULL,
  dim1 = "percent_difference_local",
  dim2 = "index_avg_strandDiscord",
  center = mean,
  dispersion = sd
)

Arguments

results

A results data frame produed by formatStats(), with MRCAs annotated with recordAncestor().

clades

A FocalCladeList object.

dim1, dim2

the name of the pairwise statistics to summarise.

center, dispersion

Functions to compute a representation of the central tendency and the dispersion of the values for each MRCA.

Author

Charles Plessy

Examples

MRCAs(Halo_DF, Halo_FocalClades)
#> # A tibble: 5 × 8
#>    MRCA     x     y   xerr     yerr     n clade         color 
#>   <dbl> <dbl> <dbl>  <dbl>    <dbl> <int> <chr>         <chr> 
#> 1     7  28.9 0.927 1.36   0.0335      16 Other         NA    
#> 2     8  17.0 0.682 0.0876 0.000411     2 Haloferax     green3
#> 3     9  25.1 0.868 0.947  0.0474       6 Other         NA    
#> 4    10  22.3 0.617 0.273  0.173        4 Halobacterium blue  
#> 5    11  18.7 0.606 0.0104 0.00136      2 Halobacterium blue