Get statistical information from .yaml files.
Examples
resultsDir <- system.file("extdata/yaml", package = "ScrambledTreeBuilder")
yamlFileData <- list.files(resultsDir, pattern = "*.yaml.bz2", full.names = TRUE)
getStats(yamlFileData[1])
#> aligned_length_Min aligned_length_Q1
#> 6.200000e+01 7.175000e+02
#> aligned_length_Median aligned_length_Mean
#> 1.409000e+03 2.177722e+03
#> aligned_length_Q3 aligned_length_Max
#> 2.926500e+03 1.812500e+04
#> aligned_length_L50 aligned_length_Total
#> 4.602071e+03 1.785732e+06
#> aligned_length_N aligned_score_Min
#> 8.200000e+02 2.420000e+02
#> aligned_score_Q1 aligned_score_Median
#> 1.643500e+03 3.905500e+03
#> aligned_score_Mean aligned_score_Q3
#> 5.899644e+03 7.701250e+03
#> aligned_score_Max aligned_score_L50
#> 5.811300e+04 1.350195e+04
#> aligned_score_Total aligned_score_N
#> 4.837708e+06 8.200000e+02
#> aligned_matches_Min aligned_matches_Q1
#> 5.500000e+01 5.537500e+02
#> aligned_matches_Median aligned_matches_Mean
#> 1.130500e+03 1.716306e+03
#> aligned_matches_Q3 aligned_matches_Max
#> 2.311250e+03 1.513100e+04
#> aligned_matches_L50 aligned_matches_Total
#> 3.695254e+03 1.407371e+06
#> aligned_matches_N aligned_mismatches_Min
#> 8.200000e+02 5.000000e+00
#> aligned_mismatches_Q1 aligned_mismatches_Median
#> 1.420000e+02 2.635000e+02
#> aligned_mismatches_Mean aligned_mismatches_Q3
#> 3.944085e+02 5.242500e+02
#> aligned_mismatches_Max aligned_mismatches_L50
#> 2.913000e+03 7.979011e+02
#> aligned_mismatches_Total aligned_mismatches_N
#> 3.234150e+05 8.200000e+02
#> aligned_gaps_target_Min aligned_gaps_target_Q1
#> 0.000000e+00 0.000000e+00
#> aligned_gaps_target_Median aligned_gaps_target_Mean
#> 1.100000e+01 3.966220e+01
#> aligned_gaps_target_Q3 aligned_gaps_target_Max
#> 5.700000e+01 3.930000e+02
#> aligned_gaps_target_L50 aligned_gaps_target_Total
#> 1.305361e+02 3.252300e+04
#> aligned_gaps_target_N aligned_gaps_query_Min
#> 8.200000e+02 0.000000e+00
#> aligned_gaps_query_Q1 aligned_gaps_query_Median
#> 0.000000e+00 8.000000e+00
#> aligned_gaps_query_Mean aligned_gaps_query_Q3
#> 2.734512e+01 3.800000e+01
#> aligned_gaps_query_Max aligned_gaps_query_L50
#> 3.270000e+02 9.337613e+01
#> aligned_gaps_query_Total aligned_gaps_query_N
#> 2.242300e+04 8.200000e+02
#> matching_aligned_Min matching_aligned_Q1
#> 5.763293e+01 7.527853e+01
#> matching_aligned_Median matching_aligned_Mean
#> 7.918828e+01 7.812704e+01
#> matching_aligned_Q3 matching_aligned_Max
#> 8.235560e+01 9.418605e+01
#> matching_aligned_L50 matching_aligned_Total
#> 7.865756e+01 6.406417e+04
#> matching_aligned_N matching_target_Min
#> 8.200000e+02 5.853659e+01
#> matching_target_Q1 matching_target_Median
#> 7.667055e+01 8.029087e+01
#> matching_target_Mean matching_target_Q3
#> 7.932612e+01 8.330848e+01
#> matching_target_Max matching_target_L50
#> 9.418605e+01 7.980250e+01
#> matching_target_Total matching_target_N
#> 6.504742e+04 8.200000e+02
#> matching_query_Min matching_query_Q1
#> 5.853659e+01 7.634382e+01
#> matching_query_Median matching_query_Mean
#> 7.992700e+01 7.907539e+01
#> matching_query_Q3 matching_query_Max
#> 8.296295e+01 9.418605e+01
#> matching_query_L50 matching_query_Total
#> 7.953733e+01 6.484182e+04
#> matching_query_N mismatching_aligned_Min
#> 8.200000e+02 5.813954e+00
#> mismatching_aligned_Q1 mismatching_aligned_Median
#> 1.543644e+01 1.812141e+01
#> mismatching_aligned_Mean mismatching_aligned_Q3
#> 1.912067e+01 2.139492e+01
#> mismatching_aligned_Max mismatching_aligned_L50
#> 3.927959e+01 2.075907e+01
#> mismatching_aligned_Total mismatching_aligned_N
#> 1.567895e+04 8.200000e+02
#> mismatching_target_Min mismatching_target_Q1
#> 5.813954e+00 1.571515e+01
#> mismatching_target_Median mismatching_target_Mean
#> 1.849935e+01 1.942023e+01
#> mismatching_target_Q3 mismatching_target_Max
#> 2.183473e+01 3.989547e+01
#> mismatching_target_L50 mismatching_target_Total
#> 2.106898e+01 1.592459e+04
#> mismatching_target_N mismatching_query_Min
#> 8.200000e+02 5.813954e+00
#> mismatching_query_Q1 mismatching_query_Median
#> 1.558840e+01 1.832280e+01
#> mismatching_query_Mean mismatching_query_Q3
#> 1.937048e+01 2.180056e+01
#> mismatching_query_Max mismatching_query_L50
#> 3.989547e+01 2.104138e+01
#> mismatching_query_Total mismatching_query_N
#> 1.588379e+04 8.200000e+02
#> aligned_width_target_Min aligned_width_target_Q1
#> 6.200000e+01 7.127500e+02
#> aligned_width_target_Median aligned_width_target_Mean
#> 1.372000e+03 2.138060e+03
#> aligned_width_target_Q3 aligned_width_target_Max
#> 2.868250e+03 1.806200e+04
#> aligned_width_target_L50 aligned_width_target_Total
#> 4.513377e+03 1.753209e+06
#> aligned_width_target_N aligned_width_query_Min
#> 8.200000e+02 6.200000e+01
#> aligned_width_query_Q1 aligned_width_query_Median
#> 7.137500e+02 1.396000e+03
#> aligned_width_query_Mean aligned_width_query_Q3
#> 2.150377e+03 2.886250e+03
#> aligned_width_query_Max aligned_width_query_L50
#> 1.796200e+04 4.543958e+03
#> aligned_width_query_Total aligned_width_query_N
#> 1.763309e+06 8.200000e+02
#> chain_width_target_Min chain_width_target_Q1
#> 6.200000e+01 6.280000e+02
#> chain_width_target_Median chain_width_target_Mean
#> 2.263000e+03 7.087052e+03
#> chain_width_target_Q3 chain_width_target_Max
#> 9.332500e+03 4.991400e+04
#> chain_width_target_L50 chain_width_target_Total
#> 2.086142e+04 2.182812e+06
#> chain_width_target_N chain_width_query_Min
#> 3.080000e+02 6.200000e+01
#> chain_width_query_Q1 chain_width_query_Median
#> 6.332500e+02 2.078000e+03
#> chain_width_query_Mean chain_width_query_Q3
#> 6.916279e+03 9.109500e+03
#> chain_width_query_Max chain_width_query_L50
#> 6.022700e+04 2.109225e+04
#> chain_width_query_Total chain_width_query_N
#> 2.130214e+06 3.080000e+02
#> collinear_width_target_Min collinear_width_target_Q1
#> 7.900000e+01 9.125000e+02
#> collinear_width_target_Median collinear_width_target_Mean
#> 1.668000e+03 2.395406e+03
#> collinear_width_target_Q3 collinear_width_target_Max
#> 3.242000e+03 1.806200e+04
#> collinear_width_target_L50 collinear_width_target_Total
#> 4.685756e+03 1.568991e+06
#> collinear_width_target_N isolated_width_target_Min
#> 6.550000e+02 6.200000e+01
#> isolated_width_target_Q1 isolated_width_target_Median
#> 3.210000e+02 6.710000e+02
#> isolated_width_target_Mean isolated_width_target_Q3
#> 1.116473e+03 1.322000e+03
#> isolated_width_target_Max isolated_width_target_L50
#> 1.219100e+04 3.045219e+03
#> isolated_width_target_Total isolated_width_target_N
#> 1.842180e+05 1.650000e+02
#> bridge_width_target_Min bridge_width_target_Q1
#> 2.000000e+00 1.090000e+02
#> bridge_width_target_Median bridge_width_target_Mean
#> 4.155000e+02 8.605500e+02
#> bridge_width_target_Q3 bridge_width_target_Max
#> 1.093500e+03 1.099500e+04
#> bridge_width_target_L50 bridge_width_target_Total
#> 2.818691e+03 4.302750e+05
#> bridge_width_target_N breakpoint_width_target_Min
#> 5.000000e+02 1.000000e+00
#> breakpoint_width_target_Q1 breakpoint_width_target_Median
#> 8.700000e+01 3.620000e+02
#> breakpoint_width_target_Mean breakpoint_width_target_Q3
#> 1.671927e+03 1.556250e+03
#> breakpoint_width_target_Max breakpoint_width_target_L50
#> 2.545500e+04 8.871944e+03
#> breakpoint_width_target_Total breakpoint_width_target_N
#> 5.015780e+05 3.000000e+02
#> inverted_width_target_Min inverted_width_target_Q1
#> 3.549000e+03 4.433500e+03
#> inverted_width_target_Median inverted_width_target_Mean
#> 5.318000e+03 5.318000e+03
#> inverted_width_target_Q3 inverted_width_target_Max
#> 6.202500e+03 7.087000e+03
#> inverted_width_target_L50 inverted_width_target_Total
#> 5.906447e+03 1.063600e+04
#> inverted_width_target_N translocated_width_target_Min
#> 2.000000e+00 4.550000e+02
#> translocated_width_target_Q1 translocated_width_target_Median
#> 2.825750e+03 7.171500e+03
#> translocated_width_target_Mean translocated_width_target_Q3
#> 1.163458e+04 1.616575e+04
#> translocated_width_target_Max translocated_width_target_L50
#> 4.308600e+04 2.279738e+04
#> translocated_width_target_Total translocated_width_target_N
#> 7.678820e+05 6.600000e+01
#> guessed_target_length_Min guessed_target_length_Q1
#> 2.697406e+06 2.697406e+06
#> guessed_target_length_Median guessed_target_length_Mean
#> 2.697406e+06 2.697406e+06
#> guessed_target_length_Q3 guessed_target_length_Max
#> 2.697406e+06 2.697406e+06
#> guessed_target_length_L50 guessed_target_length_Total
#> 2.697406e+06 2.697406e+06
#> guessed_target_length_N guessed_query_length_Min
#> 1.000000e+00 3.686400e+05
#> guessed_query_length_Q1 guessed_query_length_Median
#> 9.999100e+05 1.631180e+06
#> guessed_query_length_Mean guessed_query_length_Q3
#> 1.631180e+06 2.262450e+06
#> guessed_query_length_Max guessed_query_length_L50
#> 2.893720e+06 2.608391e+06
#> guessed_query_length_Total guessed_query_length_N
#> 3.262360e+06 2.000000e+00
#> index_synteny_target index_synteny_query
#> 9.892226e-01 1.000000e+00
#> index_correlation_target index_correlation_query
#> -6.036899e-01 -6.055977e-01
#> index_GOCvicinity4_target index_GOCvicinity4_query
#> 7.310513e-01 7.156863e-01
#> index_strandRand_target index_strandRand_query
#> 3.939730e-01 3.951871e-01